SELECT 
  cscart_product_prices.product_id, 
  COALESCE(
    cscart_master_products_storefront_min_price.price, 
    MIN(
      IF(
        cscart_product_prices.percentage_discount = 0, 
        cscart_product_prices.price, 
        cscart_product_prices.price - (
          cscart_product_prices.price * cscart_product_prices.percentage_discount
        )/ 100
      )
    )
  ) AS price 
FROM 
  cscart_product_prices 
  LEFT JOIN cscart_master_products_storefront_min_price ON cscart_master_products_storefront_min_price.product_id = cscart_product_prices.product_id 
  AND cscart_master_products_storefront_min_price.storefront_id = 1 
WHERE 
  cscart_product_prices.product_id IN (
    17, 180, 18, 16, 4, 5, 23, 24, 1, 22, 149, 
    190, 189, 3438, 3439, 3440, 3441, 136148, 
    156245, 169350, 125861, 122330, 133778, 
    146242, 143574, 121541, 130403, 120464, 
    125358, 154235, 137235, 157361
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00238

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost": 0.13249358,
    "nested_loop": [
      {
        "table": {
          "table_name": "cscart_product_prices",
          "access_type": "range",
          "possible_keys": [
            "usergroup",
            "product_id",
            "lower_limit",
            "usergroup_id",
            "wdbi_product_id_lower_limit_usergroup_id_price_eff1727beeef",
            "wdbi_usergroup_id_lower_limit_product_id_92b7e8f6a250",
            "wdbi_product_id_lower_limit_usergroup_id_price_perc_3b2301d551d0",
            "wdbi_lower_limit_usergroup_id_product_id_b93629431718"
          ],
          "key": "usergroup",
          "key_length": "9",
          "used_key_parts": ["product_id", "usergroup_id", "lower_limit"],
          "loops": 1,
          "rows": 64,
          "cost": 0.11207368,
          "filtered": 20,
          "attached_condition": "cscart_product_prices.lower_limit = 1 and cscart_product_prices.product_id in (17,180,18,16,4,5,23,24,1,22,149,190,189,3438,3439,3440,3441,136148,156245,169350,125861,122330,133778,146242,143574,121541,130403,120464,125358,154235,137235,157361) and cscart_product_prices.usergroup_id in (0,1)"
        }
      },
      {
        "table": {
          "table_name": "cscart_master_products_storefront_min_price",
          "access_type": "eq_ref",
          "possible_keys": ["PRIMARY"],
          "key": "PRIMARY",
          "key_length": "8",
          "used_key_parts": ["product_id", "storefront_id"],
          "ref": [
            "u985510652_ecartify_abhi.cscart_product_prices.product_id",
            "const"
          ],
          "loops": 12.8,
          "rows": 1,
          "cost": 0.012268032,
          "filtered": 100,
          "attached_condition": "trigcond(cscart_master_products_storefront_min_price.product_id = cscart_product_prices.product_id)"
        }
      }
    ]
  }
}

Result

product_id price
1 5399.99000000
4 699.99000000
5 899.99000000
16 349.99000000
17 110.10000000
18 0.00000000
22 799.99000000
23 599.99000000
24 449.99000000
149 53.99000000
180 180.00000000
189 1.00000000
190 899.95000000
3438 7363.44000000
3439 7363.44000000
3440 7363.44000000
3441 7363.44000000
120464 658.71000000
121541 964.36000000
122330 1582.06000000
125358 255.06000000
125861 132.18000000
130403 696.99000000
133778 440.98000000
136148 848.35000000
137235 1658.33000000
143574 844.43000000
146242 336.10000000
154235 88.95000000
156245 236.11000000
157361 1573.06000000
169350 1746.21000000